I have replicated my SpamSieve/Apple Mail setup from OS 10.6.8 in 10.9. I am using SS 2.9.10. I use three rules slightly modified from the SS manual…
SpamSieve [Score] / Every Message / Move Message to mailbox SpamSieve
SpamSieve [Blue] [Gray] [Purple] [Red] / Every Message / Move Message to mailbox Trash
SpamSieve [Spam] / Every Message / Move Message to mailbox SpamSieve
I run these rules on all messages that appear in a Smart Mailbox I created in Apple Mail that displays the contents of several IMAP spam folders (two Google accounts, one AOL account, and several accounts I run on a MediaTemple server).
These rules now result in spam messages being colored via score as desired, but none are moved into the Trash or to my SpamSieve folder (a folder I created on my Mac). Any thoughts on how I can get the whole desired behavior back with the spammy messages moved to Trash and the less spammy ones to the local folder?